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Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation

Upham, N.S.; Esselstyn, J.A.; Jetz, W.

Year2019
Source roleprimary-study
DOI / ID10.1371/journal.pbio.3000494

Fitness and scope

taxonomy · topology · geochronology · methods

Primary 31-gene mammal supermatrix and posterior-tree study; its completed 5,911-species trees add unsampled species with explicit taxonomic constraints rather than direct sequence data.

Claim ledger

topology · medium

Diprotodontia is represented as one constrained branch in a mammal-wide 31-gene phylogenetic framework, but many DNA-missing species in the completed trees were added by taxonomic constraints; the result is not direct sequence evidence for every diprotodontian or a fossil first appearance.

claim:taxon:diprotodontia:sampled-topology
topology · medium

Proboscidea is represented in the mammal-wide phylogenetic framework by sampled living elephant lineages and taxonomically completed species placements, while extinct proboscideans require separate fossil evidence; the tree does not date the order’s origin.

claim:taxon:proboscidea:sampled-topology
topology · medium

Rodentia forms a constrained higher branch in the mammal-wide 31-gene framework, but DNA-missing taxa in completed trees inherit explicit taxonomic placements; the analysis is not direct molecular evidence for every rodent or a fossil origin date.

claim:taxon:rodentia:sampled-topology
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